PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G03250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 269aa    MW: 27988.2 Da    PI: 6.9167
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G03250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.71.1e-39331331100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++apyf +e  +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lq+q++ l++e
  ONIVA10G03250.1  33 PCGACKFLRRKCVQGCIFAPYFDSEAgAAHFAAVHKVFGASNVSKLLQQIPAHRRLDAVVTICYEAQARLRDPVYGCVAHIFHLQHQVAGLQSE 126
                      7*********************998879****************************************************************** PP

           DUF260  94 lallkee 100
                      l++l+ +
  ONIVA10G03250.1 127 LNYLQGH 133
                      **99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381277.5E-1391269IPR017394LOB domain-containing protein 18/20
PROSITE profilePS5089123.10232134IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-4033131IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSSSVVVSAS GSGSGGGGGG GGGGAGGGGG GGPCGACKFL RRKCVQGCIF APYFDSEAGA  60
AHFAAVHKVF GASNVSKLLQ QIPAHRRLDA VVTICYEAQA RLRDPVYGCV AHIFHLQHQV  120
AGLQSELNYL QGHLSTMELP SPPPYVAGPT LAPPQPQPLM PMTAAANFNF SDLPSSSAAN  180
IPVTADLSTL FDPLPAAQPQ WGLYQQQQHH HQQLHHHPYD RMGDGSSSSR GGDEDGSDGG  240
DLQALARELL DRHGRSSSSS KLEPPPHTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2002360.0AB200236.1 Oryza sativa Japonica Group CRLL2 mRNA for LOB domain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613830.10.0PREDICTED: LOB domain-containing protein 30
SwissprotO813231e-63LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A0E0IPW80.0A0A0E0IPW8_ORYNI; Uncharacterized protein
STRINGLOC_Os10g07510.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.14e-58LBD family protein